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Oftalmogenética

Panel NGS de 1211 genes nucleares y Genoma Mitocondrial

  

Realizamos el estudio de los siguientes genes reconocidos como involucrados en patologías oftalmológicas, mediante secuenciación NGS y análisis de CNVs.


Patologías diagnosticadas: 

Glaucoma, Amaurosis congénita de Leber, Neuropatía óptica de Leber, Acromatopsia, Distrofias Maculares, Retinosis Pigmentaria, Enfermedad de Stargardt, Vitreoretinopatía, Microoftalmia, Atrofia óptica, Distrofia corneal, Albinismo Ocular, Albinismo Oculocutáneo, Sindrome de Usher, Sindrome de Joubert,  Degeneración macular relacionada con la edad, entre otras.


Panel de genes analizados

  AARS2, AASS, ABAT, ABCA1, ABCA3, ABCA4, ABCB6, ABCB7, ABCC6, ABCD1, ABHD12,  ACACA, ACACB, ACAD9, ACADL, ACADM, ACADS, ACADVL, ACAT1, ACBD5, ACO2, ADAM9,  ADAMTS10, ADAMTS17, ADAMTS18, ADAMTS2, ADAMTSL4, ADGRA3, ADGRV1, ADIPOR1, AFAP1,  AFG3L2, AGBL5, AGK, AGPAT1, AGPS, AGRN, AHI1, AHR, AIFM1, AIPL1, AKAP14, AKR1C1, ALAS2,  ALDH18A1, ALDH1A3, ALDH3A2, ALG1, ALG14, ALG2, ALMS1, ALPK1, ALPL, AMACR, ANGPT1,  ANKS6, ANO10, ANTXR1, AP3B1, AP3D1, AP5Z1, APC, APOB, APTX, ARFGAP2, ARHGEF12, ARHGEF18,  ARID1A, ARL13B, ARL2, ARL2BP, ARL3, ARL6, ARMC9, ARMS2, ARSG, ASB10, ASIC5, ASPH, ASRGL1,  ATAD3A, ATF6, ATOH1, ATOH7, ATP13A2, ATP1A3, ATP5F1A, ATP5F1D, ATP5F1E, ATP5MF, ATP5MG,  ATP5MGL, ATP5PB, ATP5PD, ATP7B, ATPAF1, ATPAF2, ATXN2, ATXN7, AUH, B3GALNT2, B3GALT6,  B3GLCT, B4GALT7, B4GAT1, B9D1, B9D2, BBIP1 (BBS18), BBS1, BBS10, BBS12, BBS2, BBS4, BBS5,  BBS7, BBS9, BCKDHA, BCKDHB, BCO1, BCO2, BCOR, BCS1L, BEST1, BFSP1, BFSP2, BLOC1S3,  BLOC1S5, BLOC1S6, BMP4, BMP7, BOLA3, BTD, BUB1B, C12ORF57, C12ORF65, C19ORF12, C1QBP,  C1QTNF5, C1R, C2, C2CD3, C3, C7orf26, C8A, C8B, C8ORF37, C9, CA4, CA5A, CABP4, CACNA1A,  CACNA1F, CACNA2D4, CANT1, CAPN15, CAPN5, CARS2, CASK, CAV1, CAV2, CBS, CC2D2A, CCDC103,  CCDC114, CCDC28B, CCDC39, CCDC40, CCER1, CCND1, CCNP, CCT2, CD36, CDH23, CDH3, CDHR1,  CDK5RAP2, CDKN2A, CDKN2B-AS1, CEP104, CEP120, CEP164, CEP19, CEP250, CEP290, CEP41, CEP78,  CEP83, CERKL, CFAP410, CFB, CFH, CFHR1, CFHR2, CFHR3, CFI, CHAT, CHCHD10, CHD7, CHD8,  CHERP, CHKB, CHM, CHMP4B, CHN1, CHRNA1, CHRNB1, CHRND, CHRNE, CHST14, CHST6, CIB2,  CISD2, CLCC1, CLDN19, CLEC3B, CLN3, CLN5, CLN6, CLN8, CLPB, CLPP, CLRN1, CLTA, CLUAP1,  CNGA1, CNGA3, CNGB1, CNGB3, CNNM4, CNTNAP2, COA3, COA4, COA5, COA6, COA7, COA8, COG4,  COG6, COL11A1, COL11A2, COL12A1, COL13A1, COL18A1, COL1A1, COL1A2, COL26A1, COL2A1,  COL3A1, COL4A1, COL4A2, COL4A3, COL4A4, COL4A5, COL5A1, COL5A2, COL8A1, COL8A2, COL9A1,  COL9A2, COL9A3, COLQ, COQ2, COQ4, COQ5, COQ6, COQ7, COQ8A, COQ8B, COQ9, COX10, COX11,  COX14, COX15, COX16, COX17, COX18, COX19, COX20, COX4I1, COX4I2, COX6A1, COX6A2, COX6B1,  COX6B2, COX7A1, COX7B, COX8A, CPAMD8, CPLANE1, CPT1A, CPT2, CRB1, CREBBP, CRELD1,  CRPPA, CRX, CRYAA, CRYAB, CRYBA1, CRYBA2, CRYBA4, CRYBB1, CRYBB2, CRYBB3, CRYGA,  CRYGB, CRYGC, CRYGD, CRYGS, CSMD1, CSMD2, CSPP1, CST3, CTDP1, CTNNA1, CTNNB1, CTNND1,  CTSD, CTSF, CWC27, CX3CR1, CYC1, CYCS, CYP1B1, CYP27A1, CYP4V2, CYP51A1, DAG1, DARS2,  DBT, DCC, DCDC1, DCN, DCT, DDX58, DGUOK, DHCR7, DHDDS, DHX32, DHX38, DLAT, DLD, DMD,  DNA2, DNAAF1, DNAAF2, DNAAF3, DNAAF5, DNAH11, DNAH5, DNAI1, DNAI2, DNAJC17, DNAJC19,  DNAJC30, DNAJC5, DNAL1, DNM1L, DNM2, DOCK6, DOK7, DPAGT1, DRAM2, DSCAML1, DSE, DTHD1,  DTNBP1, DYNC2H1, EARS2, ECHS1, EDN3, EDNRB, EFEMP1, ELAC2, ELOVL1, ELOVL4, ELP1, ELP4,  EMC1, ENSA, EPG5, EPHA2, ERAL1, ERCC1, ERCC2, ERCC5, ERCC6, ERCC8, ESCO2, ESPN, ETFA, ETFB,  ETFDH, ETHE1, EVA1A, EVC, EVC2, EXO5, EXOSC2, EYA1, EYS, FA2H, FAM131A, FAM161A, FARS2,  FASTKD2, FBLN5, FBN1, FBN2, FBP1, FBXL4, FCN1, FDFT1, FDX2, FDXR, FERMT1, FGF21, FH, FKBP14,  FKRP, FKTN, FLAD1, FLNB, FLVCR1, FOXC1, FOXC2, FOXE3, FOXH1, FOXRED1, FRAS1, FREM2,  FRMD7, FSCN2, FTL, FXN, FYCO1, FZD4, FZD5, G6PC, GAA, GALE, GALK1, GALM, GALT, GAMT, GAN,  GARS1, GAS7, GATB, GATC, GATM, GCDH, GCNT2, GDAP1, GDF1, GDF3, GDF6, GFER, GFM1, GFM2,  GFPT1, GJA1, GJA3, GJA8, GJB1, GJB2, GJB6, GJC3, GLA, GLIS2, GLRX5, GMDS, GMPPB, GNAT1,  GNAT2, GNB3, GNPAT, GNPTG, GNS, GPR143, GPR160, GPR179, GPR45, GRIP1, GRK1, GRM6, GRN,  GRWD1, GTPBP3, GUCA1A, GUCA1B, GUCA1C, GUCY2D, GYS2, GZF1, HADH, HADHA, HADHB,  HARS1, HARS2, HCCS, HCN1, HESX1, HGF, HGSNAT, HIBCH, HK1, HKDC1, HLCS, HMCN1, HMGB3,  HMGCL, HMGCS2, HMX1, HPS1, HPS3, HPS4, HPS5, HPS6, HSD17B10, HSF4, HSPD1, HTRA1, HTRA2,  HYCC1, HYLS1, IARS1, IARS2, IBA57, IDH3A, IDH3B, IDUA, IFT122, IFT140, IFT172, IFT27, IFT43, IFT52,  IFT54, IFT74, IFT80, IFT81, IFT88, IMPDH1, IMPG1, IMPG2, INPP5B, INPP5E, INTS1, INVS, IQCB1, ISCA1,  ISCA2, ISCU, ITM2B, JAG1, JAM3, KARS1, KCNJ13, KCNV2, KCTD7, KERA, KIAA0556, KIAA0586,  KIAA1549, KIF11, KIF1A, KIF24, KIF3B, KIF7, KIT, KIZ, KLC2, KLHL21, KLHL7, LAMA1, LAMA5,  LAMB1, LAMB2, LAMP2, LARGE1, LARS1, LARS2, LCA5, LCT, LDLR, LEFTY2, LEMD2, LENG8, LHX2,  LIAS, LIM2, LIPT1, LIPT2, LMX1B, LONP1, LOXL1, LOXL3, LRAT, LRIT3, LRMDA, LRP2, LRP4, LRP5,  LRPPRC, LRRC32, LRRC6, LSS, LTBP2, LTBP3, LYRM4, LYRM7, LYST, LZTFL1, MAB21L1, MAB21L2,  MACF1, MAF, MAK, MAN1C1, MAN2B1, MAP6D1, MAPKAPK3, MAPKBP1, MARS2, MASP1, MASP2,  MC1R, MCAT, MDH2, MECR, MEIS1, MERTK, MFF, MFN2, MFRP, MFSD8, MGME1, MICOS13, MICU1,  MIEF1, MIP, MIPEP, MIR184, MIR204, MITF, MKKS, MKS1, MLPH, MMACHC, MMP1, MMP9, MORC2,  MPC1, MPRIP, MPV17, MRM2, MRPL12, MRPL3, MRPL44, MRPS14, MRPS16, MRPS2, MRPS22, MRPS23,  MRPS34, MRPS7, MRRF, MRS2, MSRA, MSTO1, MTFMT, MTMR7, MTO1, MTPAP, MTTP, MUSK, MVK,  MXRA8, MYH9, MYO5A, MYO7A, MYO9A, MYOC, NAA10, NADK2, NARS2, NAXE, NBAS, NDP, NDRG4,  NDUFA1, NDUFA10, NDUFA11, NDUFA12, NDUFA13, NDUFA2, NDUFA4, NDUFA6, NDUFA7, NDUFA8,  NDUFA9, NDUFAF1, NDUFAF2, NDUFAF3, NDUFAF4, NDUFAF5, NDUFAF6, NDUFAF7, NDUFAF8,  NDUFB11, NDUFB3, NDUFB6, NDUFB8, NDUFB9, NDUFS1, NDUFS2, NDUFS3, NDUFS4, NDUFS5,  NDUFS6, NDUFS7, NDUFS8, NDUFV1, NDUFV2, NDUFV3, NECTIN2, NECTIN3, NEFH, NEK1, NEK2,  NEK8, NEUROD1, NF2, NFS1, NFU1, NHS, NIPAL3, NKX2-5, NME8, NMNAT1, NOD2, NODAL, NOS3,  NOTCH2, NOTCH3, NPHP1, NPHP3, NPHP4, NR2E3, NR2F1, NRCAM, NRL, NSUN3, NTF4, NUBPL,  NUTF2, NXNL1, NYX, OAT, OCA2, OCRL, OFD1, OPA1, OPA3, OPA5, OPN1LW, OPN1MW, OPN1SW,  OPTC, OPTN, OR2W3, OTC, OTOGL, OTX2, OXA1L, P3H2, PANK2, PARS2, PAX2, PAX3, PAX6, PC,  PCARE, PCCA, PCCB, PCDH15, PCK2, PCLO, PCYT1A, PDE6A, PDE6B, PDE6C, PDE6D, PDE6G, PDE6H,  PDHA1, PDHB, PDHX, PDP1, PDSS1, PDSS2, PDX1, PDXK, PDZD7, PEAK1, PEOA1, PEOA3, PET100,  PET117, PEX1, PEX10, PEX11B, PEX12, PEX13, PEX14, PEX16, PEX19, PEX2, PEX26, PEX3, PEX5, PEX6,  PEX7, PGK1, PHYH, PIBF1, PIK3R1, PITPNM3, PITRM1, PITX2, PITX3, PKM, PLA2G5, PLA2G6, PLD1,  PLD3, PLEC, PLK4, PLOD1, PLOD3, PMP22, PMPCA, PMPCB, PNPLA2, PNPLA6, PNPLA8, PNPT1, POC1B,  POC5, POLG, POLG2, POLRMT, POMGNT1, POMGNT2, POMK, POMP, POMT1, POMT2, PON2, PORCN,  PPA2, PPT1, PRCD, PRDM13, PRDM5, PREPL, PRICKLE3, PRKCI, PROM1, PROS1, PROX1, PRPF3,  PRPF31, PRPF4, PRPF6, PRPF8, PRPH2, PRPS1, PRR12, PRSS56, PRX, PTCD1, PTCD3, PTCH1, PTPRU,  PUS1, PXDN, PYGM, QARS1, QRSL1, RAB18, RAB27A, RAB28, RAB3GAP1, RAB3GAP2, RAPSN, RARB,  RARS1, RARS2, RAX, RAX2, RB1, RBMS3, RBP3, RBP4, RCBTB1, RCD1, RD3, RDH11, RDH12, RDH5,  RECQL4, REEP1, REEP6, RERE, RGR, RGS6, RGS9, RGS9BP, RHEX, RHO, RHOBTB2, RIMS1, RIMS2,  RLBP1, RMND1, RNANC, RNASEH1, RNLS, ROM1, RP1, RP1L1, RP2, RP9, RPE65, RPGR, RPGRIP1,  RPGRIP1L, RPH3A, RPL10, RPL15, RPS19, RRAGA, RRM2B, RS1, RSPH4A, RSPH9, RTBDN, RTN4IP1,  RYR1, SACS, SAG, SALL2, SAMD11, SARS2, SBF2, SC5D, SCAPER, SCARF2, SCLT1, SCN4A, SCO1,  SCO2, SDCCAG8, SDHA, SDHAF1, SDHAF2, SDHAF3, SDHAF4, SDHB, SDHC, SDHD, SEC23A, SEMA3A,  SEMA4A, SEMA6A, SERAC1, SETX, SFXN4, SH3PXD2B, SHH, SIL1, SIPA1L3, SIX1, SIX3, SIX5, SIX6,  SLC16A12, SLC18A3, SLC19A2, SLC19A3, SLC1A5, SLC22A5, SLC24A1, SLC24A5, SLC25A1, SLC25A12,  SLC25A13, SLC25A15, SLC25A19, SLC25A20, SLC25A21, SLC25A26, SLC25A3, SLC25A32, SLC25A33,  SLC25A38, SLC25A4, SLC25A40, SLC25A42, SLC25A46, SLC2A1, SLC33A1, SLC37A4, SLC38A8,  SLC39A13, SLC44A1, SLC45A2, SLC4A4, SLC4A7, SLC52A2, SLC52A2, SLC5A7, SLC6A15, SLC6A8,  SLC7A14, SMOC1, SNAI2, SNAP25, SNRNP200, SNX10, SNX3, SOD1, SOX1, SOX10, SOX2, SOX3, SPAST,  SPATA5, SPATA7, SPG11, SPG15, SPG2, SPG35, SPG45, SPG46, SPG54, SPG55, SPG57, SPG68, SPG7,  SPINT2, SPP2, SRD5A3, SREBF2, SSBP1, STARD9, STAT2, STEAP1, STEAP2, STK38L, STRA6, SUCLA2,  SUCLG1, SUFU, SUOX, SURF1, SYNE2, SYT2, SYTL4, TACO1, TACR1, TARS2, TAZ, TBC1D20, TBC1D32,  TBCE, TBK1, TCTN1, TCTN2, TCTN3, TDRD7, TEAD1, TEK, TENM3, TFAM, TFAP2A, TFB1M, TGFBI,  THBS1, TIMM22, TIMM50, TIMM8A, TIMMDC1, TIMP3, TK2, TKFC, TLCD3B, TLR3, TLR4, TMCO1,  TMED3, TMED7, TMEM107, TMEM114, TMEM126A, TMEM126B, TMEM136, TMEM138, TMEM216,  TMEM218, TMEM231, TMEM237, TMEM65, TMEM67, TMEM70, TMEM98, TNPO1, TNXB, TOP3A,  TOPORS, TOR1AIP1, TPK1, TPP1, TRAF7, TRAPPC6A, TREX1, TRIM32, TRIT1, TRMT10C, TRMT5,  TRMU, TRNT1, TRPM1, TSFM, TSPAN12, TTC14, TTC19, TTC21B, TTC8, TTLL5, TTPA, TTR, TUB,  TUBB4B, TUBGCP4, TUBGCP6, TUFM, TULP1, TWNK, TYMP, TYR, TYRP1, TXNRD2, UBIAD1, UCHL1,  UNC119, UNC13A, UNC45B, UPF3B, UQCC1, UQCC2, UQCC3, UQCR10, UQCR11, UQCRB, UQCRC2,  UQCRQ, USH1C, USH1G, USH2A, USH2C, USH2D, VAMP1, VARS2, VAX1, VAX2, VCAN, VHL, VIM,  VPS13B, VSX1, VSX2, WARS2, WDPCP, WDR17, WDR19, WDR34, WDR35, WDR36, WDR73, WDR87,  WFS1, WFS2, WHRN, WRN, XPNPEP3, XYLT2, YARS2, YBX1, YME1L1, ZEB2, ZFYVE26, ZIC3, ZNF408,  ZNF423, ZNF469, ZNF513, ZNHIT3.   

Metodología

El panel incluye genoma mitocondrial y genes mitocondriales nucleares, con una cobertura promedio de ~ 500 lecturas y al menos 30X de cobertura en más del 98% del panel. Las regiones hacia las que está dirigida la captura cubren todos los exones, los límites exón-intrón y las regiones intrónicas profundas relevantes. Las variantes patogénicas y las variantes noveles se confirman mediante secuenciación Sanger. La alineación y el llamado de variante se realiza utilizando GRCh37. S Para la clasificación de variantes se siguen las guías de ACMG: “Colegio Americano de Medicina Genética y Genómica” 

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